IRS Form 1099-SA: What It Is, Who Has to File, and How (2024)

What Is Form 1099-SA: Distributions From an HSA, Archer MSA, or Medicare Advantage MSA?

Form 1099-SA: Distributions from an HSA, Archer MSA, or Medicare Advantage MSA is an Internal Revenue Service (IRS) form that reports distributions made from various health accounts. These include distributions from a health savings account (HSA), an Archer medical savings account (MSA), or a Medicare Advantage (MA) MSA. It also provides reporting information on the inheritance of accounts by spouses, non-spouses, and estates. Amounts shown on Form 1099-SA must be reported on the taxpayer's federal income tax form.

Key Takeaways

  • Form 1099-SA form is sent to individual taxpayers who receive distributions from health savings, medical savings, and Medicare Advantage accounts.
  • Information from Form 1099-SA is reported on either Form 8853 or Form 8889.
  • Unused distributions from an HSA must be reported as income.
  • You can repay a mistaken distribution from a health savings account no later than April 15.
  • If you inherited an account from your deceased spouse, special rules apply.

Who Can File Form 1099-SA?

Form 1099-SA is filed by providers of HSAs or MSAs, including Archer and Medicare MSAs. These forms are sent to individual account holders and the IRS. Like other 1099 forms, the issuing entity should send it to the taxpayer by the end of January each year.

Receiving Form 1099-SA means that there are certain tax forms you will have to file. The forms you use (which are outlined below) depend on the type of distributions you received and the type of account from which they originated. Keep in mind that if you have an HSA, Archer MSA, or MA MSA, it probably saved you taxes.

You can deduct contributions in the year you made them, and using the funds is often tax-free as long as withdrawals are spent on qualifying health expenses for the account beneficiary or the beneficiary’s spouse or dependents.

Distributions from medical savings accounts that are used to pay for qualifying health expenses are generally tax-free.

When Distributions Are Tax-Free

The following distributions aren't taxable:

  • An HSA or Archer MSA distribution if you used it to pay qualified medical expenses of the account holder or eligible family member, or if you rolled it over to another account. An HSA may be rolled over to another HSA while an Archer MSA may be rolled over to another Archer MSA or an HSA.
  • An MA MSA isn't taxable if you used it to pay qualified medical expenses of the account holder only.

You must file IRS Form 8853: Archer MSAs and Long-Term Care Insurance Contracts or Form 8889: Health Savings Accounts (HSAs) with your Form 1040 or 1040-SR tax return forms to report a distribution from these accounts, even if the distribution isn’t taxable.

When Distributions Are Taxable

You must include the distribution in your income if you didn't use the distribution from an HSA, Archer MSA, or MA MSA to pay for qualified medical expenses. The same rule applies to an HSA or Archer MSA that you didn't roll over. You may also owe a penalty.

If you made excess contributions to an HSA or Archer MSA and had earnings on those contributions, taxes will apply. If you withdrew the excess plus the earnings by the due date of your income tax return, you must include the earnings in your income in the year you received the distribution, even if you used it to pay qualified medical expenses. A 6% excise tax for each year is also imposed on you for excess individual and employer contributions that remain in the account.

You may repay a mistaken distribution from an HSA no later than April 15 following the first year you knew or should have known the distribution was a mistake.

Inherited Accounts and Taxes

Special rules apply if you inherited an Archer MSA or MA MSA from your deceased spouse. If you inherited an HSA because of the death of your spouse, the IRS has instructions for Form 8889.

If you inherited the account from someone who wasn't your spouse, you must report as income on your tax return the fair market value (FMV) of the account as of the date of death. Report the amount on your tax return for the year the account owner died, even if you received the distribution from the account in a later year. Earnings on the account after the date of death are also taxable; include the earnings on the "Other income" line of your tax return.

If the account holder dies and the estate is the beneficiary, the FMV of the account on the date of death is included in the account holder's gross income. Report the amount on the account holder’s final income tax return.

IRS Form 1099-SA: What It Is, Who Has to File, and How (1)

All copies of Form 1099-SA are available on the IRS website.

How to Read Form 1099-SA

On the left side of Form 1099-SA, you will find:

  • The trustee’s or payer’s information, including name, address, and telephone number
  • All or part of the payer's taxpayer identification number (TIN)
  • All or part of your TIN, Social Security number, individual taxpayer identification number, adoption taxpayer identification number, or employer identification number (EIN)
  • Your personal information, including your name and address; and your account number

The right side of the form has the following information:

  • The amount received, which may have been a direct payment to a medical provider or distributed to you
  • The amount of any earnings on excess contributions
  • The distribution code, which identifies the type of distribution (there are six)
  • The fair market value of the account on the date of the holder's death
  • Information on whether the account is an HSA, Archer MSA, or MA MSA

Where Can I Get Form 1099-SA?

The financial institution that manages the account is responsible for sending you a copy of Form 1099-SA. If you haven’t received one and believe you should have, contact it.

Can Form 1099-SA Be E-Filed?

Yes, financial institutions can file electronically. To do so, they must have software that generates a file according to the specifications in IRS Pub. 1220. The IRS also provides a fill-in-form option.

Where Do I Mail Form 1099-SA?

There are three copies of the 1099-SA. The financial institution managing the account files Copy A with the IRS, sends you Copy B, and retains Copy C. You should receive Form 1099-SA in the mail. You do not need to submit it when you file your tax return, but you should hold onto it for your records.

The Bottom Line

The 1099-SA is an important form when you report distributions from special accounts to pay medical expenses. The form contains specific information that must be reported correctly and may or may not mean you owe additional taxes. If you have questions, work with a tax preparer or expert.

IRS Form 1099-SA: What It Is, Who Has to File, and How (2024)

FAQs

IRS Form 1099-SA: What It Is, Who Has to File, and How? ›

Key Takeaways. Form 1099-SA form is sent to individual taxpayers who receive distributions from health savings, medical savings, and Medicare Advantage accounts. Information from Form 1099-SA is reported on either Form 8853 or Form 8889. Unused distributions from an HSA must be reported as income.

What is a Form 1099-SA and who needs to file it? ›

A 1099-SA is a U.S. tax form that reports distributions made from a health savings account (HSA), Archer medical savings account (Archer MSA), or Medicare Advantage medical savings account (MA MSA). Its purpose is to show you (and the Internal Revenue Service) how much money you spent from your account.

How much of the Form 1099-SA amount is taxable? ›

Distributions from HSAs and MSAs that are not used for qualified medical expenses are subject to income tax and an additional 20% tax. When filing taxes, you must report taxable distributions from HSAs and MSAs on your tax return and calculate the additional 20% tax on the taxable portion of your distributions.

Who is the payer on 1099-SA? ›

This is the bank or financial institution that probably gave you a debit card in order to pay for qualified medical expenses. The Payer's name, address, city/state/zip, and telephone number are in the upper left-hand box of the 1099-SA form that you received.

Who is responsible for filing Form 1099 S? ›

Generally, the person responsible for “closing” a reportable transaction is required to file Form 1099-S. However, determining who is responsible for “closing” the transaction can differ depending on the specific facts of the transaction.

What happens if you don't file 1099-SA? ›

If you don't, you'll have to include them in your gross taxable income and pay a 6% excise tax for every year those excess contributions stay in your account.

Who is required to file 1099S? ›

Businesses are typically required to issue a 1099 form to a taxpayer (other than a corporation) who has received at least $600 or more in non-employment income during the tax year. A taxpayer might receive a 1099 form if they received dividends which are cash payments paid to investors for owning a company's stock.

How does IRS know what you spend HSA on? ›

Verification of expenses is not required for HSAs. However, total withdrawals from your HSA are reported to the IRS on Form 1099-SA. You are responsible for reporting qualified and non-qualified withdrawals when completing your taxes.

Does IRS audit HSA withdrawals? ›

Does HSA spending trigger an audit? The IRS doesn't monitor how you spend your HSA funds throughout the year, but that doesn't mean they won't ask for proof that your expenses were eligible. And if your tax return contains unrelated IRS audit red flags, your risk for an HSA audit could increase.

Can I look up my 1099-SA form online? ›

Check your online HSA account for tax forms.

Do I have to claim my HSA on taxes? ›

HSA distributions are reported to the account owner on Form 1099-SA. This form is issued by the financial institution. Form 8889 must be filed with your annual Form 1040 federal tax filing if you make contributions to or take distributions from an HSA.

What is the difference between recipient and payer on a 1099? ›

The payer is the person, business, or tax entity that paid the money to the recipient. In most cases, the payer is the property management company, landlord, or association. Below, we offer general guidance on how to complete the payer section of the 1099 tax filing.

How does a health savings account affect my taxes? ›

Health Savings Accounts offer a triple-tax advantage* – deposits are tax-deductible, growth is tax-deferred, and spending is tax-free. All contributions to your HSA are tax-deducible, or if made through payroll deductions, are pre-tax which lowers your overall taxable income.

Whose responsibility is it to file a 1099? ›

Per IRS guidelines, employers are required to issue a 1099 to independent contractors who earned more than $600 in non-employment compensation in a year by January 31 of the following year. Form 1099-NEC is sent to the worker or business that performed services, as well as to the IRS.

Do both people have to file 1099-s? ›

Each person who signs the agreement must keep it for 4 years. For each transaction, be sure that only one person is responsible for filing and that only one Form 1099-S is filed for each transferor.

Who is exempt from 1099-S reporting? ›

Additionally, a 1099S is not required for the sale or exchange of a principal residence with gross proceeds of $250,000 or less ($500,000 or less for married filing jointly) if an acceptable written assurance (certification) from the seller is obtained that indicates the full gain is excludable from the seller's gross ...

Who is exempt from receiving a 1099 S form? ›

Additionally, a 1099S is not required for the sale or exchange of a principal residence with gross proceeds of $250,000 or less ($500,000 or less for married filing jointly) if an acceptable written assurance (certification) from the seller is obtained that indicates the full gain is excludable from the seller's gross ...

Who should file a 1099 tax form? ›

If you made a payment during the calendar year as a small business or self-employed (individual), you are most likely required to file an information return to the IRS. Receipt of certain payments may also require you to file an information return to the IRS.

Do I have to report 5498 SA on my tax return? ›

The trustee of your HSA, Archer MSA, or MA MSA may provide other information about your account on this form. Note: Don't attach Form 5498-SA to your income tax return. Instead, keep it for your records.

How much of Luther's Form 1099-SA amount is taxable? ›

Of Luther's Form 1099-SA amount, $100 is taxable because PPE is not a qualified expense for 2023. Explanation: Personal Protective Equipment (PPE) to prevent the spread of COVID-19 is considered a qualified medical expense for HSA purposes in 2023.

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